IL_8PNN_203

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_203 not in the Motif Atlas

Homologous match to IL_8CRE_448

Geometric discrepancy: 0.1577

The information below is about IL_8CRE_448

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PNN|1|A|G|1213
8PNN|1|A|U|1214
8PNN|1|A|C|1215
*
8PNN|1|A|G|1448
8PNN|1|A|U|1449
8PNN|1|A|U|1450

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S10-A

Chain Q

40S ribosomal protein S15

Chain e

Small ribosomal subunit protein uS14A

Chain g

Ubiquitin