IL_8PNN_213
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_213 not in the Motif Atlas
- Homologous match to IL_8CRE_456
- Geometric discrepancy: 0.117
- The information below is about IL_8CRE_456
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8PNN|1|A|U|1290
8PNN|1|A|G|1291
8PNN|1|A|G|1292
*
8PNN|1|A|C|1323
8PNN|1|A|G|1324
8PNN|1|A|A|1325
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S0-A
- Chain D
- 40S ribosomal protein S2
- Chain E
- Small ribosomal subunit protein uS3
- Chain S
- 40S ribosomal protein S17-A
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