IL_8PNN_216

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8PNN|1|A|A|1346, 8PNN|1|A|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_216 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.2295

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8PNN|1|A|A|1345
8PNN|1|A|A|1346
8PNN|1|A|U|1347
8PNN|1|A|A|1348
*
8PNN|1|A|U|1377
8PNN|1|A|U|1378
8PNN|1|A|C|1379
8PNN|1|A|U|1380

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain V

Small ribosomal subunit protein uS10