IL_8PNN_217

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8PNN|1|A|U|1370, 8PNN|1|A|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_217 not in the Motif Atlas

Homologous match to IL_8P9A_471

Geometric discrepancy: 0.437

The information below is about IL_8P9A_471

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8PNN|1|A|G|1352
8PNN|1|A|U|1353
8PNN|1|A|G|1354
*
8PNN|1|A|U|1369
8PNN|1|A|U|1370
8PNN|1|A|A|1371
8PNN|1|A|U|1372
8PNN|1|A|C|1373

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A

Chain V

Small ribosomal subunit protein uS10