IL_8PNN_222

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_222 not in the Motif Atlas

Homologous match to IL_8P9A_451

Geometric discrepancy: 0.1047

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8PNN|1|A|G|1540
8PNN|1|A|G|1541
8PNN|1|A|G|1542
8PNN|1|A|A|1543
8PNN|1|A|U|1544
8PNN|1|A|A|1545
*
8PNN|1|A|U|1566
8PNN|1|A|U|1567
8PNN|1|A|C|1568
8PNN|1|A|A|1569
8PNN|1|A|A|1570
8PNN|1|A|C|1571

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S18-A

Chain U

40S ribosomal protein S19-A