IL_8PNN_234
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_234 not in the Motif Atlas
- Homologous match to IL_8P9A_463
- Geometric discrepancy: 0.1564
- The information below is about IL_8P9A_463
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8PNN|1|A|A|1678
8PNN|1|A|G|1679
8PNN|1|A|G|1680
8PNN|1|A|A|1681
8PNN|1|A|U|1682
*
8PNN|1|A|A|1719
8PNN|1|A|G|1720
8PNN|1|A|A|1721
8PNN|1|A|A|1722
8PNN|1|A|U|1723
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain H
- 40S ribosomal protein S6-A
- Chain J
- 40S ribosomal protein S8-A
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