3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AGGAU*AGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PNN_234 not in the Motif Atlas
Homologous match to IL_8P9A_463
Geometric discrepancy: 0.1564
The information below is about IL_8P9A_463
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

8PNN|1|A|A|1678
8PNN|1|A|G|1679
8PNN|1|A|G|1680
8PNN|1|A|A|1681
8PNN|1|A|U|1682
*
8PNN|1|A|A|1719
8PNN|1|A|G|1720
8PNN|1|A|A|1721
8PNN|1|A|A|1722
8PNN|1|A|U|1723

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 7
60S ribosomal protein L24-A
Chain H
40S ribosomal protein S6-A
Chain J
40S ribosomal protein S8-A

Coloring options:


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