IL_8PNN_238
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8PNN|1|AR|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_238 not in the Motif Atlas
- Homologous match to IL_8P9A_234
- Geometric discrepancy: 0.036
- The information below is about IL_8P9A_234
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PNN|1|AR|C|31
8PNN|1|AR|U|32
8PNN|1|AR|G|33
8PNN|1|AR|A|34
8PNN|1|AR|A|35
8PNN|1|AR|C|36
8PNN|1|AR|U|37
8PNN|1|AR|U|38
*
8PNN|1|AR|A|45
8PNN|1|AR|U|46
8PNN|1|AR|C|47
8PNN|1|AR|A|48
8PNN|1|AR|A|49
8PNN|1|AR|U|50
8PNN|1|AR|A|51
8PNN|1|AR|A|52
8PNN|1|AR|G|53
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DC
- 60S ribosomal protein L28
- Chain DL
- 60S ribosomal protein L37-A
- Chain DQ
- 60S ribosomal protein L42-A
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