IL_8PNN_247
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8PNN|1|AR|A|398, 8PNN|1|AR|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_247 not in the Motif Atlas
- Geometric match to IL_8P9A_243
- Geometric discrepancy: 0.0392
- The information below is about IL_8P9A_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
8PNN|1|AR|G|376
8PNN|1|AR|A|377
8PNN|1|AR|A|378
8PNN|1|AR|C|379
*
8PNN|1|AR|G|390
8PNN|1|AR|A|391
8PNN|1|AR|G|392
8PNN|1|AR|U|393
8PNN|1|AR|G|394
8PNN|1|AR|A|395
8PNN|1|AR|A|396
8PNN|1|AR|A|397
8PNN|1|AR|A|398
8PNN|1|AR|A|399
8PNN|1|AR|G|400
8PNN|1|AR|U|401
8PNN|1|AR|A|402
8PNN|1|AR|C|403
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CR
- 60S ribosomal protein L17-A
- Chain DA
- 60S ribosomal protein L26-A
- Chain DN
- 60S ribosomal protein L39
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