IL_8PNN_252

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8PNN|1|AR|U|534, 8PNN|1|AR|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_252 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.0377

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8PNN|1|AR|G|531
8PNN|1|AR|A|532
8PNN|1|AR|A|533
8PNN|1|AR|U|534
8PNN|1|AR|G|535
8PNN|1|AR|U|536
8PNN|1|AR|A|537
8PNN|1|AR|G|538
*
8PNN|1|AR|U|553
8PNN|1|AR|A|554
8PNN|1|AR|U|555
8PNN|1|AR|U|556
8PNN|1|AR|A|557
8PNN|1|AR|U|558
8PNN|1|AR|A|559
8PNN|1|AR|G|560
8PNN|1|AR|C|561

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CO

60S ribosomal protein L14-A

Chain CU

60S ribosomal protein L20-A