IL_8PNN_253

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_253 not in the Motif Atlas

Homologous match to IL_8P9A_249

Geometric discrepancy: 0.0649

The information below is about IL_8P9A_249

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8PNN|1|AR|G|668
8PNN|1|AR|U|669
8PNN|1|AR|C|670
*
8PNN|1|AR|G|792
8PNN|1|AR|C|793
8PNN|1|AR|U|794

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain CN

60S ribosomal protein L13-A

Chain CS

60S ribosomal protein L18-A

Chain DC

60S ribosomal protein L28