IL_8PNN_262

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_262 not in the Motif Atlas

Homologous match to IL_8P9A_258

Geometric discrepancy: 0.0432

The information below is about IL_8P9A_258

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8PNN|1|AR|U|834
8PNN|1|AR|G|835
8PNN|1|AR|A|836
8PNN|1|AR|A|837
8PNN|1|AR|G|838
*
8PNN|1|AR|U|855
8PNN|1|AR|G|856
8PNN|1|AR|G|857
8PNN|1|AR|A|858
8PNN|1|AR|G|859

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CT

60S ribosomal protein L19-A

Chain DR

60S ribosomal protein L43-A