IL_8PNN_290

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8PNN|1|AR|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_290 not in the Motif Atlas

Homologous match to IL_8P9A_286

Geometric discrepancy: 0.0508

The information below is about IL_8P9A_286

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8PNN|1|AR|C|1385
8PNN|1|AR|A|1386
8PNN|1|AR|G|1387
*
8PNN|1|AR|C|1420
8PNN|1|AR|G|1421

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CH

60S ribosomal protein L6-A

Chain DG

60S ribosomal protein L32