IL_8PNN_299

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_299 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.0613

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8PNN|1|AR|U|1645
8PNN|1|AR|G|1646
8PNN|1|AR|A|1647
8PNN|1|AR|A|1648
8PNN|1|AR|U|1649
*
8PNN|1|AR|A|1806
8PNN|1|AR|G|1807
8PNN|1|AR|G|1808
8PNN|1|AR|A|1809
8PNN|1|AR|A|1810

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DB

60S ribosomal protein L27-A

Chain DI

60S ribosomal protein L34-A