IL_8PNN_304

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_304 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.0482

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23038.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8PNN|1|AR|U|1702
8PNN|1|AR|U|1703
8PNN|1|AR|A|1704
8PNN|1|AR|U|1705
8PNN|1|AR|C|1706
8PNN|1|AR|A|1707
*
8PNN|1|AR|U|1737
8PNN|1|AR|C|1738
8PNN|1|AR|U|1739
8PNN|1|AR|U|1740
8PNN|1|AR|A|1741
8PNN|1|AR|U|1742
8PNN|1|AR|G|1743

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L34-A

Chain DR

60S ribosomal protein L43-A