IL_8PNN_305
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8PNN|1|AR|U|1716, 8PNN|1|AR|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_305 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.0621
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PNN|1|AR|C|1711
8PNN|1|AR|G|1712
8PNN|1|AR|G|1713
8PNN|1|AR|A|1714
8PNN|1|AR|A|1715
8PNN|1|AR|U|1716
8PNN|1|AR|U|1717
*
8PNN|1|AR|G|1727
8PNN|1|AR|G|1728
8PNN|1|AR|A|1729
8PNN|1|AR|G|1730
8PNN|1|AR|A|1731
8PNN|1|AR|U|1732
8PNN|1|AR|G|1733
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CT
- 60S ribosomal protein L19-A
- Chain DB
- 60S ribosomal protein L27-A
- Chain DE
- 60S ribosomal protein L30
- Chain DI
- 60S ribosomal protein L34-A
- Chain DR
- 60S ribosomal protein L43-A
- Chain c3
- 40S ribosomal protein S13
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