IL_8PNN_315
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8PNN|1|AR|U|2159, 8PNN|1|AR|U|2175, 8PNN|1|AR|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_315 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.0393
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20047.1
- Basepair signature
- cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|AR|C|2156
8PNN|1|AR|G|2157
8PNN|1|AR|A|2158
8PNN|1|AR|U|2159
8PNN|1|AR|G|2160
8PNN|1|AR|G|2161
*
8PNN|1|AR|U|2173
8PNN|1|AR|G|2174
8PNN|1|AR|U|2175
8PNN|1|AR|U|2176
8PNN|1|AR|G|2177
8PNN|1|AR|A|2178
8PNN|1|AR|C|2179
8PNN|1|AR|G|2180
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain DR
- 60S ribosomal protein L43-A
- Chain sR
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: