IL_8PNN_319

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8PNN|1|AR|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_319 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.0703

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8PNN|1|AR|G|2206
8PNN|1|AR|A|2207
8PNN|1|AR|A|2208
8PNN|1|AR|U|2209
8PNN|1|AR|G|2210
*
8PNN|1|AR|C|2235
8PNN|1|AR|G|2236
8PNN|1|AR|C|2237

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain sR

Small subunit ribosomal RNA; SSU rRNA