IL_8PNN_321

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_321 not in the Motif Atlas

Geometric match to IL_8P9A_317

Geometric discrepancy: 0.0492

The information below is about IL_8P9A_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8PNN|1|AR|G|2276
8PNN|1|AR|C|2277
*
8PNN|1|AR|G|2307
8PNN|1|AR|C|2308
8PNN|1|AR|A|2309
8PNN|1|AR|U|2310

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

Large ribosomal subunit protein eL41B

Chain sR

Small subunit ribosomal RNA; SSU rRNA