IL_8PNN_346

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8PNN|1|AR|A|3142, 8PNN|1|AR|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_346 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.048

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8PNN|1|AR|C|3004
8PNN|1|AR|A|3005
8PNN|1|AR|A|3006
8PNN|1|AR|U|3007
*
8PNN|1|AR|A|3139
8PNN|1|AR|G|3140
8PNN|1|AR|A|3141
8PNN|1|AR|A|3142
8PNN|1|AR|C|3143
8PNN|1|AR|G|3144

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A