IL_8PNN_357

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8PNN|1|AR|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_357 not in the Motif Atlas

Geometric match to IL_8P9A_372

Geometric discrepancy: 0.3311

The information below is about IL_8P9A_372

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PNN|1|AR|C|3193
8PNN|1|AR|C|3194
*
8PNN|1|AR|G|3197
8PNN|1|AR|U|3198
8PNN|1|AR|G|3199

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CO

60S ribosomal protein L14-A

Chain CQ

60S ribosomal protein L16-A