IL_8PNN_362

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8PNN|1|AR|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_362 not in the Motif Atlas

Homologous match to IL_8CRE_136

Geometric discrepancy: 0.292

The information below is about IL_8CRE_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PNN|1|AR|G|3318
8PNN|1|AR|U|3319
8PNN|1|AR|A|3320
*
8PNN|1|AR|U|3387
8PNN|1|AR|C|3388

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain DF

60S ribosomal protein L31-A