IL_8PNN_369

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8PNN|1|AS|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_369 not in the Motif Atlas

Homologous match to IL_8P9A_364

Geometric discrepancy: 0.0732

The information below is about IL_8P9A_364

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8PNN|1|AS|C|15
8PNN|1|AS|U|16
*
8PNN|1|AS|A|63
8PNN|1|AS|A|64
8PNN|1|AS|G|65

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10

Chain CM

Large ribosomal subunit protein uL5B