IL_8PNN_388

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8PNN|1|sR|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_388 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.0653

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8PNN|1|sR|G|143
8PNN|1|sR|U|144
8PNN|1|sR|A|145
8PNN|1|sR|U|146
8PNN|1|sR|A|147
8PNN|1|sR|A|148
8PNN|1|sR|C|149
*
8PNN|1|sR|G|165
8PNN|1|sR|C|166
8PNN|1|sR|U|167
8PNN|1|sR|A|168
8PNN|1|sR|A|169
8PNN|1|sR|U|170
8PNN|1|sR|A|171
8PNN|1|sR|C|172

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CY

60S ribosomal protein L24-A

Chain d4

40S ribosomal protein S24-A

Chain s6

40S ribosomal protein S6-A