IL_8PNN_393

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

8PNN|1|sR|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|sR|A|213
8PNN|1|sR|G|214
8PNN|1|sR|A|215
8PNN|1|sR|U|216
8PNN|1|sR|A|217
8PNN|1|sR|A|218
8PNN|1|sR|A|219
8PNN|1|sR|A|220
8PNN|1|sR|A|221
8PNN|1|sR|A|222
8PNN|1|sR|U|223
8PNN|1|sR|C|224
8PNN|1|sR|A|225
8PNN|1|sR|A|226
8PNN|1|sR|U|227
8PNN|1|sR|G|228
8PNN|1|sR|U|229
8PNN|1|sR|C|230
8PNN|1|sR|U|231
8PNN|1|sR|U|232
8PNN|1|sR|C|233
8PNN|1|sR|G|234
8PNN|1|sR|G|235
8PNN|1|sR|A|236
8PNN|1|sR|C|237
8PNN|1|sR|U|238
8PNN|1|sR|C|239
8PNN|1|sR|U|240
8PNN|1|sR|U|241
8PNN|1|sR|U|242
8PNN|1|sR|G|243
*
8PNN|1|sR|C|250
8PNN|1|sR|A|251
8PNN|1|sR|U|252

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A