IL_8PNN_394

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

8PNN|1|sR|A|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_394 not in the Motif Atlas

Homologous match to IL_8P9A_388

Geometric discrepancy: 0.0538

The information below is about IL_8P9A_388

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8PNN|1|sR|A|265
8PNN|1|sR|A|266
8PNN|1|sR|U|267
*
8PNN|1|sR|A|288
8PNN|1|sR|U|289

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A