IL_8PNN_398

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8PNN|1|sR|U|320, 8PNN|1|sR|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_398 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.0699

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8PNN|1|sR|U|318
8PNN|1|sR|U|319
8PNN|1|sR|U|320
8PNN|1|sR|C|321
8PNN|1|sR|G|322
8PNN|1|sR|A|323
*
8PNN|1|sR|U|345
8PNN|1|sR|G|346

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain c1

40S ribosomal protein S11-A

Chain s8

40S ribosomal protein S8-A