IL_8PNN_399

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8PNN|1|sR|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_399 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.042

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8PNN|1|sR|G|363
8PNN|1|sR|G|364
8PNN|1|sR|G|365
*
8PNN|1|sR|C|376
8PNN|1|sR|G|377
8PNN|1|sR|A|378
8PNN|1|sR|U|379
8PNN|1|sR|U|380
8PNN|1|sR|C|381

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A