IL_8PNN_420

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

8PNN|1|sR|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_420 not in the Motif Atlas

Homologous match to IL_8P9A_415

Geometric discrepancy: 0.0712

The information below is about IL_8P9A_415

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8PNN|1|sR|G|819
8PNN|1|sR|U|820
8PNN|1|sR|U|821
8PNN|1|sR|U|822
*
8PNN|1|sR|A|850
8PNN|1|sR|U|851
8PNN|1|sR|C|852

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A