IL_8PNN_421

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_421 not in the Motif Atlas

Homologous match to IL_8P9A_468

Geometric discrepancy: 0.0826

The information below is about IL_8P9A_468

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|sR|U|822
8PNN|1|sR|G|823
8PNN|1|sR|G|824
8PNN|1|sR|U|825
*
8PNN|1|sR|A|847
8PNN|1|sR|C|848
8PNN|1|sR|C|849
8PNN|1|sR|A|850

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A