IL_8PNN_440

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACAAUAAGGAUUG*CUUGAUUUUGU

Length

24 nucleotides

Bulged bases

8PNN|1|sR|G|1228, 8PNN|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|sR|A|1221
8PNN|1|sR|C|1222
8PNN|1|sR|A|1223
8PNN|1|sR|A|1224
8PNN|1|sR|U|1225
8PNN|1|sR|A|1226
8PNN|1|sR|A|1227
8PNN|1|sR|G|1228
8PNN|1|sR|G|1229
8PNN|1|sR|A|1230
8PNN|1|sR|U|1231
8PNN|1|sR|U|1232
8PNN|1|sR|G|1233
*
8PNN|1|sR|C|1252
8PNN|1|sR|U|1253
8PNN|1|sR|U|1254
8PNN|1|sR|G|1255
8PNN|1|sR|A|1256
8PNN|1|sR|U|1257
8PNN|1|sR|U|1258
8PNN|1|sR|U|1259
8PNN|1|sR|U|1260
8PNN|1|sR|G|1261
8PNN|1|sR|U|1262

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A