IL_8PNN_443

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8PNN|1|sR|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_443 not in the Motif Atlas

Geometric match to IL_8P9A_438

Geometric discrepancy: 0.1102

The information below is about IL_8P9A_438

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8PNN|1|sR|U|1272
8PNN|1|sR|G|1273
8PNN|1|sR|C|1274
8PNN|1|sR|A|1275
8PNN|1|sR|U|1276
*
8PNN|1|sR|A|1436
8PNN|1|sR|U|1437
8PNN|1|sR|G|1438

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d0

Small ribosomal subunit protein uS10

Chain d9

Small ribosomal subunit protein uS14A

Chain s3

Small ribosomal subunit protein uS3