IL_8PNN_446

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8PNN|1|sR|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_446 not in the Motif Atlas

Homologous match to IL_8P9A_441

Geometric discrepancy: 0.0775

The information below is about IL_8P9A_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8PNN|1|sR|C|1280
8PNN|1|sR|G|1281
*
8PNN|1|sR|C|1426
8PNN|1|sR|A|1427
8PNN|1|sR|G|1428

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

Small ribosomal subunit protein uS10

Chain d9

Small ribosomal subunit protein uS14A

Chain s2

40S ribosomal protein S2

Chain s3

Small ribosomal subunit protein uS3