IL_8PNN_448

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_448 not in the Motif Atlas

Homologous match to IL_8P9A_443

Geometric discrepancy: 0.086

The information below is about IL_8P9A_443

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8PNN|1|sR|C|1306
8PNN|1|sR|U|1307
8PNN|1|sR|G|1308
*
8PNN|1|sR|C|1317
8PNN|1|sR|G|1318

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain d6

Small ribosomal subunit protein eS26B