IL_8PPK_012

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|U|115
8PPK|1|2|OMU|116
8PPK|1|2|C|117
8PPK|1|2|C|118
8PPK|1|2|PSU|119
8PPK|1|2|U|120
8PPK|1|2|OMU|121
8PPK|1|2|G|122
*
8PPK|1|2|C|342
8PPK|1|2|A|343
8PPK|1|2|U|344
8PPK|1|2|U|345
8PPK|1|2|C|346
8PPK|1|2|G|347
8PPK|1|2|A|348

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11