IL_8PPK_013

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

8PPK|1|2|C|142, 8PPK|1|2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|G|130
8PPK|1|2|U|140
8PPK|1|2|A|141
8PPK|1|2|C|142
8PPK|1|2|U|143
8PPK|1|2|U|144
*
8PPK|1|2|A|175
8PPK|1|2|U|176
8PPK|1|2|G|177
8PPK|1|2|C|178
8PPK|1|2|C|179
8PPK|1|2|G|180
8PPK|1|2|A|181
8PPK|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6