IL_8PPK_015

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_015 not in the Motif Atlas

Homologous match to IL_8C3A_403

Geometric discrepancy: 0.1412

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|C|151
8PPK|1|2|U|152
8PPK|1|2|G|153
8PPK|1|2|U|154
*
8PPK|1|2|A|164
8PPK|1|2|G|165
8PPK|1|2|A2M|166
8PPK|1|2|G|167

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24