IL_8PPK_016

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3374

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8PPK|1|2|C|188
8PPK|1|2|U|189
8PPK|1|2|G|190
8PPK|1|2|A|191
8PPK|1|2|C|192
*
8PPK|1|2|G|207
8PPK|1|2|G|208
8PPK|1|2|A|209
8PPK|1|2|PSU|210
8PPK|1|2|G|211

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8