IL_8PPK_025

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCCACUC*GGA(OMG)G

Length

12 nucleotides

Bulged bases

8PPK|1|2|G|507

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_025 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.354

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|C|490
8PPK|1|2|C|491
8PPK|1|2|C|492
8PPK|1|2|A|493
8PPK|1|2|C|494
8PPK|1|2|U|495
8PPK|1|2|C|496
*
8PPK|1|2|G|506
8PPK|1|2|G|507
8PPK|1|2|A|508
8PPK|1|2|OMG|509
8PPK|1|2|G|510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24