IL_8PPK_028

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

8PPK|1|2|G|588

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_028 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1301

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8PPK|1|2|G|563
8PPK|1|2|A|564
8PPK|1|2|G|565
*
8PPK|1|2|C|585
8PPK|1|2|G|586
8PPK|1|2|A|587
8PPK|1|2|G|588
8PPK|1|2|G|589
8PPK|1|2|A2M|590
8PPK|1|2|U|591
8PPK|1|2|C|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

Small ribosomal subunit protein eS30