IL_8PPK_045

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)A*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|G|807
8PPK|1|2|A|808
8PPK|1|2|A|809
8PPK|1|2|A|810
8PPK|1|2|A|811
8PPK|1|2|A|812
8PPK|1|2|A|813
8PPK|1|2|PSU|814
8PPK|1|2|PSU|815
8PPK|1|2|A|816
*
8PPK|1|2|U|848
8PPK|1|2|A|849
8PPK|1|2|C|850
8PPK|1|2|C|851
8PPK|1|2|G|852
8PPK|1|2|C|853
8PPK|1|2|A|854
8PPK|1|2|G|855
8PPK|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain L

40S ribosomal protein S11

Chain W

40S ribosomal protein S15a