IL_8PPK_067

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_067 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2335

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8PPK|1|2|G|1222
8PPK|1|2|A|1223
8PPK|1|2|G|1224
*
8PPK|1|2|U|1642
8PPK|1|2|PSU|1643
8PPK|1|2|C|1644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16