IL_8PPK_074

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8PPK|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_074 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1136

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|U|1329
8PPK|1|2|G|1330
8PPK|1|2|C|1331
8PPK|1|2|A|1332
8PPK|1|2|U|1333
*
8PPK|1|2|A|1498
8PPK|1|2|U|1499
8PPK|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain j

Nsp1