IL_8PPK_077

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GU(PSU)GG*CGA(A2M)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|G|1345
8PPK|1|2|U|1346
8PPK|1|2|PSU|1347
8PPK|1|2|G|1348
8PPK|1|2|G|1349
*
8PPK|1|2|C|1380
8PPK|1|2|G|1381
8PPK|1|2|A|1382
8PPK|1|2|A2M|1383
8PPK|1|2|C|1384

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain D

40S ribosomal protein S3

Chain R

40S ribosomal protein S17