IL_8PPK_089

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_089 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0966

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8PPK|1|2|G|1604
8PPK|1|2|G|1605
8PPK|1|2|G|1606
8PPK|1|2|A|1607
8PPK|1|2|U|1608
8PPK|1|2|C|1609
8PPK|1|2|G|1610
*
8PPK|1|2|C|1629
8PPK|1|2|A|1630
8PPK|1|2|U|1631
8PPK|1|2|G|1632
8PPK|1|2|A|1633
8PPK|1|2|A|1634
8PPK|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19