IL_8PPK_091

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_091 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.0942

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8PPK|1|2|G|1702
8PPK|1|2|OMC|1703
8PPK|1|2|C|1704
8PPK|1|2|C|1705
*
8PPK|1|2|G|1829
8PPK|1|2|U|1830
8PPK|1|2|A|1831
8PPK|1|2|6MZ|1832
8PPK|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

60S ribosomal protein L41

Chain j

Nsp1

Chain p

Eukaryotic translation initiation factor 1