IL_8PPK_095

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_095 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.147

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8PPK|1|2|C|1717
8PPK|1|2|G|1718
8PPK|1|2|A|1719
8PPK|1|2|U|1720
*
8PPK|1|2|A|1813
8PPK|1|2|G|1814
8PPK|1|2|A|1815
8PPK|1|2|G|1816

Current chains

Chain 2

18S rRNA

Nearby chains

Chain h

60S ribosomal protein L41