IL_8PPK_102

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

8PPK|1|2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_102 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3232

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8PPK|1|2|C|1750
8PPK|1|2|C|1751
8PPK|1|2|C|1752
*
8PPK|1|2|G|1780
8PPK|1|2|A|1781
8PPK|1|2|G|1782
8PPK|1|2|C|1783
8PPK|1|2|G|1784

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6