IL_8PPK_106

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_106 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2244

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8PPK|1|2|OMU|116
8PPK|1|2|C|117
8PPK|1|2|C|118
8PPK|1|2|PSU|119
8PPK|1|2|U|120
8PPK|1|2|OMU|121
*
8PPK|1|2|A|343
8PPK|1|2|U|344
8PPK|1|2|U|345
8PPK|1|2|C|346
8PPK|1|2|G|347

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8