IL_8PPK_117

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8PPK|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_117 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2422

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PPK|1|2|G|925
8PPK|1|2|A|926
*
8PPK|1|2|U|1015
8PPK|1|2|U|1016
8PPK|1|2|U|1017

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27