IL_8PPK_121
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GC(OMC)*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPK_121 not in the Motif Atlas
- Geometric match to IL_5TBW_079
- Geometric discrepancy: 0.1158
- The information below is about IL_5TBW_079
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8PPK|1|2|G|1270
8PPK|1|2|C|1271
8PPK|1|2|OMC|1272
*
8PPK|1|2|G|1510
8PPK|1|2|U|1511
8PPK|1|2|C|1512
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain P
- 40S ribosomal protein S15
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
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